Towards a Semantic Web Application: Ontology-Driven Ortholog Clustering Analysis

نویسندگان

  • Yu Lin
  • Zuoshuang Xiang
  • Yongqun He
چکیده

Ontology is the foundation of Semantic Web applications. The Clusters of Orthologous Groups (COG) system uses evolutionary relationships to cluster proteins from different genomes into different functional categories. In this study, we generated a COG Analysis Ontology (CAO), and used it to develop OntoCOG, an ontology-based Semantic Web application for COG-based gene set enrichment analysis. As a use case, OntoCOG is applied to a list of B. melitensis virulence factors retrieved from the Brucellosis Ontology (BO). This OntoCOG analysis confirms and expands current knowledge about B. melitensis virulence factors.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Centralized Clustering Method To Increase Accuracy In Ontology Matching Systems

Ontology is the main infrastructure of the Semantic Web which provides facilities for integration, searching and sharing of information on the web. Development of ontologies as the basis of semantic web and their heterogeneities have led to the existence of ontology matching. By emerging large-scale ontologies in real domain, the ontology matching systems faced with some problem like memory con...

متن کامل

Query Architecture Expansion in Web Using Fuzzy Multi Domain Ontology

Due to the increasing web, there are many challenges to establish a general framework for data mining and retrieving structured data from the Web. Creating an ontology is a step towards solving this problem. The ontology raises the main entity and the concept of any data in data mining. In this paper, we tried to propose a method for applying the "meaning" of the search system, But the problem ...

متن کامل

An Overview: Towards Ontology-Driven Software Development

The Semantic Web and Software Engineering are two separate communities. Recent efforts in the context of Semantic Web vision have lead to a number of standards such as OWL and Web Services technologies. However, in the context of Software Engineering, most of software developers have little guidance on how to build a real-world Semantic Web application. In addition, most software developers are...

متن کامل

Construction of an Ortholog Database Using the Semantic Web Technology for Integrative Analysis of Genomic Data

Recently, various types of biological data, including genomic sequences, have been rapidly accumulating. To discover biological knowledge from such growing heterogeneous data, a flexible framework for data integration is necessary. Ortholog information is a central resource for interlinking corresponding genes among different organisms, and the Semantic Web provides a key technology for the fle...

متن کامل

An Executive Approach Based On the Production of Fuzzy Ontology Using the Semantic Web Rule Language Method (SWRL)

Today, the need to deal with ambiguous information in semantic web languages is increasing. Ontology is an important part of the W3C standards for the semantic web, used to define a conceptual standard vocabulary for the exchange of data between systems, the provision of reusable databases, and the facilitation of collaboration across multiple systems. However, classical ontology is not enough ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2011